data_warehouse_client-1.3.8

Package details:

Name: data-warehouse-client

Version: 1.3.8

Summary: This package provides access to the e-Science Central data warehouse that can be used to store, access and analyse data collected in scientific studies, including for healthcare applications

Home-page: https://github.com/e-science-central/data-warehouse-client

Author: Paul Watson

Author-email: [email protected]

License: UNKNOWN

Number of Python files: 16

  • data_warehouse_client/clone_study_metadata.py

    (1369 characters, 178 words)

    imported modules: data_warehouse_client

    defined functions: clone_study_metadata

  • data_warehouse_client/csv_io.py

    (2514 characters, 305 words)

    imported modules: typing, csv

    defined functions: export_measurements_as_csv, export_measurement_groups_as_csv

  • data_warehouse_client/sample_queries.py

    (7973 characters, 815 words)

    imported modules: data_warehouse_client, data_warehouse_client, data_warehouse_client, data_warehouse_client, data_warehouse_client, datetime

  • data_warehouse_client/file_utils.py

    (1398 characters, 167 words)

    imported modules: string, pkg_resources

    defined functions: process_sql_template

  • data_warehouse_client/study_summary.py

    (8022 characters, 840 words)

    imported modules: tabulate, data_warehouse_client, data_warehouse_client, datetime

    defined functions: get_instances_per_measurement_group, print_all_instances_in_a_study, print_study_summary, mk_txt_report_file_name, mk_csv_report_file_name, print_all_instances_in_a_study_to_file, print_all_instances_in_a_study_to_csv_files, print_all_instances_in_a_study_with_local_participant_id_to_csv_files, print_study_summary_to_file

  • data_warehouse_client/delete_study_contents.py

    (2534 characters, 345 words)

    defined functions: delete_study_contents, delete_study_measurements, table_names_to_delete, measurement_table_names, metadata_table_names, delete_study_completely

  • data_warehouse_client/plot.py

    (6131 characters, 613 words)

    imported modules: data_warehouse_client, matplotlib.backends.backend_pdf, print_metadata_table, datetime

    defined functions: plot_measurements, mk_pdf_report_file_name, plot_distributions

  • data_warehouse_client/__init__.py

    (0 characters, 0 words)

  • data_warehouse_client/table_reader_json.py

    (1050 characters, 161 words)

    imported modules: json

    defined functions: read_json_tables

  • data_warehouse_client/load_warehouse_helpers.py

    (24217 characters, 3198 words)

    imported modules: functools

    defined functions: process_message_group, type_names, check_int, check_real, check_datetime, check_boolean, type_check, get_and_check_value, mk_basic_field, mk_optional_basic_field, mk_int, mk_optional_int, mk_bounded_int, mk_optional_bounded_int, mk_real, mk_optional_real, mk_bounded_real, mk_optional_bounded_real, mk_string, mk_optional_string, mk_datetime, mk_optional_datetime, mk_boolean, mk_optional_boolean, mk_category_from_dict, mk_category_field, mk_optional_category_field, mk_nominal, mk_ordinal, mk_nominal_from_id, mk_ordinal_from_id, mk_optional_nominal_from_dict, mk_optional_nominal_from_id, mk_optional_ordinal_from_dict, mk_optional_ordinal_from_id, split_enum, get_converter_fn

  • data_warehouse_client/transform_result_format.py

    (6162 characters, 726 words)

    defined functions: form_measurements, form_measurement_group

  • data_warehouse_client/data_warehouse.py

    (36702 characters, 3623 words)

    imported modules: datetime, sys, psycopg2, json, more_itertools, data_warehouse_client, data_warehouse_client

    defined classes: DataWarehouse

    defined functions: get_participants_in_result, field_holding_value, mk_where_condition, core_sql_from_for_measurements, core_sql_for_where_clauses, core_sql_for_where_clauses_for_cohort, make_value_test, core_sql_select_for_measurements, core_sql_for_measurements

  • data_warehouse_client/table_writer_json.py

    (4380 characters, 535 words)

    imported modules: json, os

    defined functions: table_to_dictionary, tables_to_dictionary, data_warehouse_metadata_tables_to_dictionary, metadata_table_names, dictionary_to_json_file, data_warehouse_metadata_tables_to_file, write_tables_in_dw_from_dictionary, insert_rows_in_dw_from_dictionary

  • data_warehouse_client/warehouse_checker.py

    (10208 characters, 1141 words)

    imported modules: data_warehouse_client, data_warehouse_client, data_warehouse_client, tabulate, datetime

    defined functions: check_category_exists, check_integer_bounds_exist, check_real_bounds_exist, check_valtype_matches_values, check_category_in_range, check_bounded_integers, check_bounded_reals, print_check_warehouse, mk_txt_report_file_name, print_check_warehouse_to_file

  • data_warehouse_client/print_io.py

    (3845 characters, 454 words)

    imported modules: typing, tabulate

    defined functions: print_rows, print_measurement_group_instances, print_measurements, print_rows_to_file, print_measurement_group_instances_to_file, print_measurements_to_file

  • data_warehouse_client/print_metadata_table.py

    (7409 characters, 719 words)

    imported modules: data_warehouse_client, tabulate, datetime

    defined functions: valuetype_to_name, mk_txt_report_file_name, print_metadata_tables_to_file, print_metadata_tables, mk_optional, create_measurement_group_info

…

tags: data_warehouse_client-1.3.8 & category: python